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PDBe EMBL-EBI

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  1. arpeggio arpeggio Public

    Calculation of interatomic interactions in molecular structures

    Python 143 24

  2. ccdutils ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    Python 85 12

  3. pdbe-api-training pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    Jupyter Notebook 61 21

  4. pdb-images pdb-images Public

    Generates images from mmCIF/BCIF files

    TypeScript 46 5

  5. SIFTS SIFTS Public

    Python 43 2

  6. PDBe-MCP-Servers PDBe-MCP-Servers Public

    PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema as…

    Python 40 1

Repositories

Showing 10 of 49 repositories
  • mmcif-validator Public

    Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

    PDBeurope/mmcif-validator's past year of commit activity
    Python 11 3 0 1 Updated Oct 1, 2026
  • ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    PDBeurope/ccdutils's past year of commit activity
    Python 85 Apache-2.0 12 1 3 Updated Oct 1, 2026
  • PDBe-MCP-Servers Public

    PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.

    PDBeurope/PDBe-MCP-Servers's past year of commit activity
    Python 40 Apache-2.0 1 0 2 Updated Sep 29, 2026
  • heatmap-component Public

    Canvas-based Interactive Heatmap Component

    PDBeurope/heatmap-component's past year of commit activity
    TypeScript 2 Apache-2.0 0 0 2 Updated Sep 29, 2026
  • SIFTS Public
    PDBeurope/SIFTS's past year of commit activity
    Python 43 2 0 2 Updated Sep 24, 2026
  • AFDB-Integration-Kit Public

    This repository provides a set of easy-to-use tools for generating the required files and metadata to seamlessly integrate your models into AFDB.

    PDBeurope/AFDB-Integration-Kit's past year of commit activity
    C++ 3 CC0-1.0 1 1 2 Updated Sep 24, 2026
  • InsightFold Public

    Notebook-Driven Development to nurture new features supported and maintained by our diverse user base.

    PDBeurope/InsightFold's past year of commit activity
    Jupyter Notebook 0 1 0 11 Updated Sep 23, 2026
  • protvista-pdb Public

    PDB ProtVista Viewer

    PDBeurope/protvista-pdb's past year of commit activity
    JavaScript 11 Apache-2.0 8 0 12 Updated Sep 23, 2026
  • mmcif-gen Public

    This application is designed to create mmcif files from facilities data.

    PDBeurope/mmcif-gen's past year of commit activity
    Python 7 1 2 0 Updated Sep 21, 2026
  • ner_for_protein_structures Public
    PDBeurope/ner_for_protein_structures's past year of commit activity
    Python 1 0 0 1 Updated Sep 18, 2026
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