Merge branch 'feature/merge-v2.2.0' of HPC-OpenFold/openfold-mirror i…

…nto fugaku_v2

Merge branch 'feature/13677' of HPC-OpenFold/openfold-mirror into fug…

…aku_v1

Merge pull request aqlaboratory#534 from aqlaboratory/pl_upgrades

Update openfold to use pytorch 2 and other updated dependencies

Merge pull request aqlaboratory#439 from aqlaboratory/setup-improvements

Adds Documentation and minor quality of life fixes

Merge pull request aqlaboratory#405 from aqlaboratory/multimer

Full multimer merge

Remove duplicate author from .cff

Fix another PDB parsing bug

Update TorchScript call in inference script