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Fix cyclic_reses error when doing scaffoldguided.scaffoldguided=True - #407

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RuizhiPeng wants to merge 5 commits into
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RuizhiPeng:main

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When running secondary structure specified diffusion, there is an error
AttributeError: 'ScaffoldedSampler' object has no attribute 'cyclic_reses'.
This is caused by ScaffoldedSample class doesn't call parent class's sample_init() method but rather overrides a new one. The new one didn't include cyclic_reses initialization.

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