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Achievement: Pull Sharkx2Achievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: StarstruckAchievement: Arctic Code Vault Contributor

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SAMtoBAM/README.md

I am a genomicist interested in the evolution of genome structure and content
My repos contain packaged tools or pipelines with lengthy explanations

Linux bash R Markdown Stars

Recent projects/pipelines/tools

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  1. MUMandCo MUMandCo Public

    MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

    Shell 77 15

  2. PhasedDiploidGenomeAssemblyPipeline PhasedDiploidGenomeAssemblyPipeline Public

    Using de-novo assembly and read-phasing to assemble reference-free diploid genomes

    R 23 3

  3. PAQman PAQman Public

    PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies

    Shell 9

  4. stargraph stargraph Public

    A complete Starship and Starship-like region detection tool combining genome-graph based and starfish detection

    Shell 4 2

  5. fusemblr fusemblr Public

    fusemblr is a pipeline wrapper designed for the assembly of complex genomes using nanopore reads and paired-end illumina

    Shell 4

  6. TLRFinder TLRFinder Public

    This repository contains scripts/tools in order to detect Telomere-Linked-Repeats (TLRs)

    Shell 3