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Sarkaft/README.md

👋 Hi, I'm Sarkaft Ghreeb Omer

🔬 Bioinformatics | Data Science | Computational Biology | Biomedical Science

I am a bioinformatics and computational biology professional with a strong academic background in biomedical and biological sciences. I am passionate about leveraging computational tools and data science to solve complex biological problems—especially in genomics and precision medicine.

🎓 Education

  • M.Sc. in Biomedical Science(Machine Learning-United kingdom
  • B.Sc. in Biological Science-Iraq

Certifications & Online Courses:

  • Introduction to Bioinformatics
  • Machine Learning Specialization by Andrew Ng (Coursera)
  • Python and R for Data Science (edX & Coursera)

🧪 Research & Projects

I’ve conducted and contributed to multiple bioinformatics projects, with a focus on:

  • RNA-Seq and transcriptomics
  • bioinformatics integraterd tools
  • Genomic data analysis
  • Machine learning in biology
  • Multi-omics data integration
  • Workflow automation using Python and R

📄 I have also published peer-reviewed scientific papers related to my research.

🛠️ Technical Skills

Programming & Scripting:

  • Python, R, Bash

Bioinformatics Tools:

  • FastQC, Trimmomatic, HISAT2, HTSeq, Salmon, Kallisto, Seurat, Scanpy

Computational Platforms:

  • HPC (High-Performance Computing), Git, Docker, Jupyter

Data Visualization:

  • ggplot2, Matplotlib, R Shiny.

Machine Learning:

  • Scikit-learn, TensorFlow (basic), Pandas, NumPy

📫 Let's Connect!

💡 I’m always open to research collaborations and bioinformatics/data science projects. Let’s build something impactful together!

Pinned Loading

  1. Causal-Inference-and-Discovery-in-Python Causal-Inference-and-Discovery-in-Python Public

    Forked from PacktPublishing/Causal-Inference-and-Discovery-in-Python

    Causal Inference and Discovery in Python by Packt Publishing

    Jupyter Notebook

  2. XAI-for-bioinformatics XAI-for-bioinformatics Public

    Forked from rezacsedu/XAI-for-bioinformatics

    Explainable AI for Bioinformatics

    Jupyter Notebook

  3. machine-learning-specialization-andrew-ng machine-learning-specialization-andrew-ng Public

    Forked from pmulard/machine-learning-specialization-andrew-ng

    A collection of notes and implementations of machine learning algorithms from Andrew Ng's machine learning specialization.

    Jupyter Notebook 1

  4. Online_R_learning Online_R_learning Public

    Forked from cxli233/Online_R_learning

    Online R learning for applied statistics

  5. TCGA_analysis TCGA_analysis Public

    Forked from gtonkinhill/TCGA_analysis

    HTML 1

  6. QuickDA QuickDA Public

    Forked from sid-the-coder/QuickDA

    Simple & Easy-to-use python modules to perform Quick Exploratory Data Analysis for any structured dataset!

    Python