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1. PCAone PCAone Public

   Fast, Accurate and Memory-Efficient Principal Component Analysis All in One For Large-scale Dataset

   C++ 55 5

2. rwdavies/QUILT rwdavies/QUILT Public

   QUILT: Low coverage whole genome sequence imputation with large reference panels

   R 68 11

3. vcfpp vcfpp Public

   a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

   C++ 27 5

4. vcfppR vcfppR Public

   The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049

   C 21 4

5. SVUPP SVUPP Public

   genotype Structural Variants Using Pre-Phased Reads

   Nextflow 10

6. phaseless phaseless Public

   Imputation and Admixture for lcWGS in one goal

   C++ 5