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1. Covid-Mortality-Prediction Covid-Mortality-Prediction Public

   Gated-access, multi-tenant genomics scoring product using interpretable ML to turn SARS-CoV-2 genomes into case-fatality rate (CFR) predictions with mutation-level attribution; Nextflow on AWS Batc…

   TypeScript 1

2. ONT-CPG-Methylation-Predictor ONT-CPG-Methylation-Predictor Public

   End-to-end ONT CpG methylation ML platform: FAST5→POD5→Dorado alignment→coverage-filtered CpG signal extraction with k-mer context to WebDataset sharding to CNN+Transformer training, global evaluat…

   Python

3. Microbial-Genome-Assembly-QC Microbial-Genome-Assembly-QC Public

   Microbial genome assembly & QC workflow (FastQC→Trimmomatic→SPAdes→QUAST→BUSCO) for three wastewater isolates; includes evidence reports + outlier interpretation.

   HTML

4. Breast-Cancer-Predictor Breast-Cancer-Predictor Public

   An end-to-end pipeline combining R-based preprocessing of single-cell breast tissue RNA-seq data with Python Random Forest modeling under leave-one-out cross-validation to identify tumor presence.

   HTML

5. ESR1-Motif-Scanner ESR1-Motif-Scanner Public

   A Python command-line tool that scans DNA sequences for ESR1‐binding motifs by computing PWM log‐odds scores across 15-mer windows on both strands.

   Python

6. Protein-Reciprocal-Hits Protein-Reciprocal-Hits Public

   A command‐line toolkit for computing pairwise protein alignment scores using BLOSUM62, identifying best reciprocal hits between human and chicken gene sets to infer putative orthology relationships…

   Python