All pull requests

Pull requests

• Add optional Read online beside AlphaFold Nature cite

  #587·euwyngoh opened Sep 15, 2026·

  ·

• Fix multimer interface residue detection

  #586·Tanokri02 opened Aug 10, 2026·

  ·
  1

• feat: integrate strux-rs for high-performance MSA preprocessing

  #583·QntmSeer opened Jun 21, 2026·

  ·

• Fix SoloSeq embedding truncation behavior

  #580·samanyuckulkarni123 opened Jun 8, 2026·

  ·

• Expose mmseqs --db-load-mode in precompute_alignments_mmseqs.py

  #579·XunOuyang opened Jun 7, 2026·

  ·

• Fix incorrect atom ordering in Protein.atom_positions comment (N, CA, C)

  #578·XunOuyang opened Jun 4, 2026·

  ·
  1

• Fix script_utils invalid regex escape warning

  #577·taivu1998 opened May 10, 2026·

  ·
  1

• Fix duplicate-sequence multimer mmCIF chain coordinates

  #576·taivu1998 opened May 10, 2026·

  ·
  1

• Fix batched multimer template embedding shapes

  #575·taivu1998 opened May 10, 2026·

  ·
  1

• Fix template offload helpers for long-sequence inference

  #574·taivu1998 opened May 10, 2026·

  ·
  1

• Fix batched supervised chi periodicity loss

  #573·taivu1998 opened May 10, 2026·

  ·
  1

• Fix per-example loss scaling for mixed-length batches

  #572·taivu1998 opened May 10, 2026·

  ·
  1

• Fix chain center-of-mass loss weighting

  #571·taivu1998 opened May 10, 2026·

  ·
  1

• Remove unused atom14 default-frame gather

  #570·taivu1998 opened May 10, 2026·

  ·
  1

• Bump actions/checkout from 5 to 6

  dependenciesgithub_actions
  #558·dependabot[bot] opened Nov 20, 2025Bot·

  ·

• Bump actions/setup-python from 5 to 6

  dependenciesgithub_actions
  #552·dependabot[bot] opened Sep 4, 2025Bot·

  ·

• Explicitly set reentrant to False for torch checkpointing

  #528·an1lam opened Mar 31, 2025·

  ·
  1

• Feat/cyclic offset

  #526·ioannisa92 opened Mar 22, 2025·

  ·
  2

• Update PDB download link

  #507·davidsimon opened Nov 18, 2024·

  ·

• fix: set numpy and deepspeed dependency versions

  #503·etowahadams opened Nov 13, 2024Contributor·

  ·
  2

• Update run_pretrained_openfold.py

  #493·Lix1993 opened Oct 12, 2024·

  ·

• fix typo in config.py

  #487·Lix1993 opened Sep 14, 2024·

  ·

• Bug Fix: Preserve full FASTA ID in alignment directory parsing to prevent truncation errors

  #485·juliocesar-io opened Sep 7, 2024·

  ·

• OpenFold Local Jupyter Notebook 📔 | Metrics, Plots, Concurrent Inference

  #484·juliocesar-io opened Aug 28, 2024·

  ·

• Fix for docs on deepspeed inference

  #482·josemduarte opened Aug 26, 2024Collaborator·

  ·
  3