Computational Biologist — Genomics · Epigenomics · Single-Cell & Spatial Multi-Omics · Statistical ML
Postdoctoral researcher at Karolinska Institutet — cancer genomics, chromatin biology, and machine learning. Full bio, publications, and CV on my portfolio.
Peer-reviewed, alignment-free gene-prioritization methods I developed — each with documented code, tests, CI, and an archived Zenodo DOI.
| Method | Repository | Software DOI |
|---|---|---|
| Moment of inertia tensor | moment-of-inertia-tensor-gene-prioritization |  |
| Chaos game + 2D MF-X-DFA | cgr-mfxdfa-gene-prioritization |  |
| qPCR Efficiency-correction | Efficiency-corrected-rt-qpcr | |
| Computational modeling of mRNA cytoplasmic levels | Computational modeling of mRNA cytoplasmic levels | Currently Private |
| Single-cell RNA-seq pipeline | A reproducible, config-driven scRNA-seq pipeline | |
| extrachromosomal circular DNA (ecDNA) detection | A reproducible wrapper for detecting extrachromosomal circular DNA (ecDNA) from whole-genome sequencing (WGS) |
More repositories on the way. 🚧
