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1. staphscope-typing-tool staphscope-typing-tool Public

   StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…

   Python 33 1

2. EcoliTyper EcoliTyper Public

   EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic res…

   Python 27 1

3. acinetoscope acinetoscope Public

   AcinetoScope: A species-specific computational pipeline for rapid, comprehensive Acinetobacter baumannii outbreak investigation and resistance gene tracking

   Python 13

4. pseudoscope pseudoscope Public

   A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis

   Python 9

5. Kleboscope Kleboscope Public

   Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance

   Python 5

6. eskape-web-platform eskape-web-platform Public

   Welcome to the ESKAPE AMR Platform – a free, open-source web application that integrates seven species-specific genomic analysis pipelines into a single, user-friendly interface.

   HTML 7