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bilal3005/README.md

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Hi, I'm Bilal 👋🧬

Data Scientist | ML & AI applied to healthcare, biology & drug discovery

I'm at the intersection of Machine Learning and Life Sciences. My work spans deep learning model development, genomic data pipelines, and predictive modeling applied to healthcare and drug discovery, with a growing interest in medtech and computer vision for medical imaging. I'm drawn to problems where the data is messy, the stakes are high, and a well-tuned model can make a real difference.


🔬 What I'm Into

ML & deep learning — model design, training, fine-tuning, from CNNs to transformers

Computer vision — applied to medical imaging and biological image analysis

Genomics & structural bioinformatics — sequence modeling, epitope prediction, NGS pipelines

Drug discovery & precision medicine — computational target identification, molecular data analysis

Clean, reproducible science — modular pipelines, HPC/SLURM, version-controlled experiments


🛠️ Tech Stack

Languages

Python R SQL Bash

ML / DL Frameworks

PyTorch TensorFlow scikit-learn

Data & Viz

Pandas NumPy Matplotlib ggplot2 Seaborn

Data Science

Feature Engineering Model Evaluation Cross-Validation Hyperparameter Tuning Pipelines PCA/UMAP Time Series

MLOps / Data

ETL Data Cleaning Reproducibility Docker Experiment Tracking

Bioinformatics

RNA-seq scRNA-seq Variant Calling Genome Assembly Differential Expression GO/KEGG Enrichment NGS QC Alignment Protein Structure Sequence Modeling BLAST PyMOL Biopython

Infrastructure

Linux Git SLURM Cloud


📫 Let's Connect

Gmail

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  1. RNA-Folding-Ribonanza RNA-Folding-Ribonanza Public

    Deep learning pipeline for per-position RNA reactivity prediction (DMS & 2A3) — BiLSTM, LSTM+Conv1D, and Transformer benchmarked on Stanford's Ribonanza Kaggle dataset.

    Python 1

  2. REMC-Project REMC-Project Public

    Lattice protein folding model implemented in Python with Monte Carlo (MC) and Replica Exchange Monte Carlo (REMC).

    Python

  3. listeria-gene-prediction listeria-gene-prediction Public

    Lightweight prokaryotic gene caller using ORF detection and Shine–Dalgarno motif scoring, applied to Listeria monocytogenes EGD-e.

    Python