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1. apb-pileup-browser apb-pileup-browser Public

   A genome browser tailored to exploratory viewing and querying of variant loci.

   C++ 9

2. expos expos Public

   Spatial and complexity information extraction for variant loci from alignment data

   C++ 1

3. cancerit/hairpin2 cancerit/hairpin2 Public

   artefact flagging algorithm based on Ellis et al. 2020 (DOI: 10.1038/s41596-020-00437-6) for LCM sequencing

   Python 3

4. cancerit/pileup-events cancerit/pileup-events Public

   modernised implementation of bam2R from the deepSNV R library. Standalone tool + R and Python bindings

   C++ 2

5. cancerit/CaVEMan cancerit/CaVEMan Public

   SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

   C 86 18

6. PacRunner PacRunner Public

   ncurses sidescrolling runner game. YomYom!

   Python 2