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1. AllenNeuralDynamics/aind-torch-utils AllenNeuralDynamics/aind-torch-utils Public

   Generic, queue-based, multi-GPU PyTorch inference pipeline for large volumetric (3D or 5D T,C,Z,Y,X) data.

   Python 3

2. morphonets/SNT morphonets/SNT Public

   Forked from fiji/SNT

   The framework for quantification of neuronal anatomy

   Java 61 19

3. AllenNeuralDynamics/exaspim-flatfield-correction AllenNeuralDynamics/exaspim-flatfield-correction Public

   Illumination correction library for large 3D images

   Jupyter Notebook 3 1

4. AllenNeuralDynamics/aind-data-transfer AllenNeuralDynamics/aind-data-transfer Public

   Python 2 3

5. AllenNeuralDynamics/exaspim-sam AllenNeuralDynamics/exaspim-sam Public

   Unified data annotation, training and inference for SAM on ExaSPIM

   Python

6. AllenNeuralDynamics/aind-exaspim-image-compression AllenNeuralDynamics/aind-exaspim-image-compression Public

   A Python package for compressing ExaSPIM image datasets via denoising and lossy compression.

   Python 2 1