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1. aadr-resolve aadr-resolve Public

   AADR cross-version GeneticID / MasterID join utility for ancient-DNA / population-genetics workflows

   Python

2. aadr-subset aadr-subset Public

   A small CLI that reads an AADR `.anno` file plus a YAML selector and emits a sample-ID list suitable for `plink2 --keep`, `pgen-samplebind --keep`, or any downstream tool that wants a subset of the…

   Python

3. admixture-cache admixture-cache Public

   Precomputed-P supervised-ADMIXTURE projection cache: build slow once per panel, infer K-vectors for new samples in seconds.

   Python

4. pgen-samplebind pgen-samplebind Public

   A small standalone tool that does the one thing plink2's `--pmerge` doesn't yet do: bind two or more PFILE/BFILE datasets that share variants but contain different samples.Targeted at the ancient-D…

   Python

5. pileup-aadr pileup-aadr Public

   One-shot user-BAM → AADR-site pseudohaploid genotypes for ancient-DNA pipelines

   Python

6. uqrmaie1/admixtools uqrmaie1/admixtools Public

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