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1. mskcc/vcf2maf mskcc/vcf2maf Public

   Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

   Perl 418 221

2. Build an Azure stack to operate NP-s... Build an Azure stack to operate NP-series VMs on Azure with Dragen's pay-as-you-go (PAYG) license

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   ### Purpose

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   Build an Azure stack to operate NP-series VMs on Azure with Dragen's pay-as-you-go (PAYG) license.

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   ### Prerequisites

3. Compare the speed of containerized b... Compare the speed of containerized bwa-mem using various base images

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   On a Linux VM or Workstation with `docker` installed, fetch the GRCh38 FASTA, its index, and a pair of FASTQs:

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   ```bash

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   wget -P /hot/ref https://storage.googleapis.com/genomics-public-data/references/GRCh38_Verily/GRCh38_Verily_v1.genome.fa{,.fai}

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   wget -P /hot/reads/test https://storage.googleapis.com/data.cyri.ac/test_L001_R{1,2}_001.fastq.gz

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   ```

4. dotfiles dotfiles Public

   My bash dotfiles

   Shell