Mirror of https://codeberg.org/cmkobel/genomedk-jobs (auto-synced via Codeberg push mirror)

Windows alt-tab on macOS

AltTab with the Pro gating removed, rebuilt from upstream daily. GPL-3.0, in both directions.

Materials for Natural Language Processing, Fall 2025

Materials for Natural Language Processing, Fall 2026

The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search

A Jekyll implementation of the Stylish Portfolio template by Start Bootstrap

Tactile is a Jekyll theme for GitHub Pages

UCE is a zero-shot foundation model for single-cell gene expression data

The goal of CSCpromoters is to extract, export and plot sequences of promoter regions from the genome fasta files.

R toolkit for single cell genomics

Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements.

Efficient phylogenetic tree inference for massive taxonomic datasets

SynCom Fingerprinting (SyFi)

A pipeline for bioinformatics analysis of bacterial genomes

Aligns short reads using dynamic seed size with strobemers

AlphaFold 3 inference pipeline.

Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

End of Term Web Archive 2024

Artificial MAGs from existing genomes

A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t

Synteny and Rearrangement Identifier

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.