cmungall

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Chris Mungall cmungall

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Computer Research Scientist at Berkeley Lab. Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

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Lawrence Berkeley National Laboratory
Berkeley, CA
http://berkeleybop.org/people/chris-mungall
in/chrismungall
@Cmungall@genomic.social
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@chrismungall

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cmungall/README.md

Chris Mungall (@cmungall)

Computer Research Scientist at Berkeley Lab.

Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

GPT-3 Summary

:

TODO

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obophenotype/uberon obophenotype/uberon Public

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 147 37
geneontology/go-ontology geneontology/go-ontology Public

Source ontology files for the Gene Ontology

Makefile 240 47
geneontology/obographs geneontology/obographs Public

Basic and Advanced OBO Graphs: specification and reference implementation

Java 68 15
evoldoers/biomake evoldoers/biomake Public

GNU-Make-like utility for managing builds and complex workflows

Prolog 110 9
monarch-initiative/ontogpt monarch-initiative/ontogpt Public

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 793 101
linkml/linkml linkml/linkml Public

Linked Open Data Modeling Language

Python 455 147