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cole-trapnell-lab

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  1. monocle3 monocle3 Public

    R 436 116

  2. cufflinks cufflinks Public

    C++ 320 115

  3. monocle-release monocle-release Public

    R 292 124

  4. garnett garnett Public

    Automated cell type classification

    R 116 29

  5. cicero-release cicero-release Public

    R 59 16

  6. sci-plex sci-plex Public

    repository containing analysis scripts and auxiliary files

    R 37 3

Repositories

Showing 10 of 36 repositories
  • platt Public
    cole-trapnell-lab/platt’s past year of commit activity
    R 3 MIT 0 12 0 Updated Jan 21, 2026
  • monocle3 Public
    cole-trapnell-lab/monocle3’s past year of commit activity
    R 436 116 257 4 Updated Jan 8, 2026
  • hooke Public

    A package for comparing cell type abundances between conditions

    cole-trapnell-lab/hooke’s past year of commit activity
    R 10 1 21 0 Updated Jan 8, 2026
  • cole-trapnell-lab.github.io Public
    cole-trapnell-lab/cole-trapnell-lab.github.io’s past year of commit activity
    HTML 14 12 3 4 Updated Dec 18, 2025
  • homebrew-trapnell Public

    Custom Homebrew R formula with accelerated linear algebra support

    cole-trapnell-lab/homebrew-trapnell’s past year of commit activity
    Ruby 3 1 0 0 Updated Oct 8, 2025
  • trapnell-cluster Public

    Common scripts for working on the cluster

    cole-trapnell-lab/trapnell-cluster’s past year of commit activity
    Shell 0 1 0 0 Updated Sep 15, 2025
  • leidenbase Public
    cole-trapnell-lab/leidenbase’s past year of commit activity
    C 13 13 13 2 Updated Mar 31, 2025
  • garnett Public

    Automated cell type classification

    cole-trapnell-lab/garnett’s past year of commit activity
    R 116 MIT 29 7 0 Updated Jan 3, 2025
  • homebrew-r-srf Public archive Forked from sethrfore/homebrew-r-srf

    Custom Homebrew R formula with tcl-tk support and additional options

    cole-trapnell-lab/homebrew-r-srf’s past year of commit activity
    Ruby 0 18 0 0 Updated Dec 9, 2024
  • cicero-release Public
    cole-trapnell-lab/cicero-release’s past year of commit activity
    R 59 MIT 16 11 1 Updated Sep 3, 2024
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