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d33bs/README.md

Hi, I'm Dave 👋

I'm a software engineer and technical leader focused on open-source data infrastructure, analytical systems, and software for complex scientific data.

I've been on Github for 13 years. During that time I've contributed to 109 repositories, opened 839 issues, performed 1509 code reviews, and have opened 1216 pull requests.

I maintain 21 Python packages on PyPI (downloaded 11,236 times last month), have 34 archived releases on Zenodo, and work I'm involved with has received 112 citations.

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  1. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 8 1

  2. cytomining/CytoTable cytomining/CytoTable Public

    Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.

    Python 21 6

  3. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 13 2

  4. cytomining/pycytominer cytomining/pycytominer Public

    Python package for image-based profiling

    Python 144 42

  5. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 25 6

  6. xqlsystems/duckdb-zarr xqlsystems/duckdb-zarr Public

    Query Zarr stores with SQL directly from DuckDB

    Rust 59 4