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1. BindAxTransformer BindAxTransformer Public

   BindAxTransformer is a transformer-based model trained on protein-ligand interactions using self-supervised learning. This repository provides a detailed implementation and educational resource, sh…

   Python 4

2. Camformer Camformer Public

   Forked from Bornelov-lab/Camformer

   Code repository for the paper "Predicting gene expression using millions of yeast promoters reveals cis-regulatory logic." Fork updates: Includes pre-training scripts. Refer to the directory (pretr…

   Jupyter Notebook

3. Rethinking-Sequences-With-Mamba Rethinking-Sequences-With-Mamba Public

   A deep dive into the Mamba architecture for sequence modeling, exploring its core principles, biological relevance, and why it might just be the next big thing after Transformers.

4. Drive-Sync Drive-Sync Public

   Drive Sync: Automatic File Sync with Google Drive

   Python

5. AutoDock-GPU-Pipeline AutoDock-GPU-Pipeline Public

   This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced pe…

   Python 4

6. AutoDockPipeline AutoDockPipeline Public

   Your one-stop solution for protein-ligand docking. This pipeline simplifies molecular docking, helping researchers study protein-ligand interactions efficiently. It offers clear instructions and cu…

   Python 6