Skip to content

Problem installing DiffDock #285

Description

@xavgit

HI,
I'm experimenting the following error
ERROR: failed to solve: failed to compute cache key: failed to calculate checksum of ref b0ca4b88-1088-435a-bfc5-3220f1caea1d::t4w21q0xi5sny0gu8c05nccnv: "/home/appuser/micromamba": not found
Any suggestion to fix it?

Thanks.

Saverio

In the following the complete output of the used commands.

xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ conda activate diffdock
(diffdock) xxxx@xxxx-Predator-PHN16-71:~/sources/DiffDock$ docker build . -f Dockerfile -t diffdock
[+] Building 29.3s (5/22) docker:default
=> [internal] load metadata for docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04 1.8s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 1.60kB 0.0s
=> [internal] load build context 0.1s
=> => transferring context: 6.13MB 0.0s
=> [builder 1/8] FROM docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 27.5s
=> => resolve docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 0.0s
=> => sha256:28a6f693c19c36c4f911a996b8d7697bb3b423cc20fc455ddcca13373efd45b8 16.30kB / 16.30kB 0.0s
=> => sha256:a3184e4dc6f968da5bba86df3081ff3013f8e3674a9bfce544af8be905d2f17a 2.63kB / 2.63kB 0.0s
=> => sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 39.85MB / 47.88MB 27.5s
=> => sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 743B / 743B 0.0s
=> => sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 29.54MB / 29.54MB 8.5s
=> => sha256:976b13f9ef1ad110649609e8622e8b8010c011ee89afb03c87729873a5658b77 4.62MB / 4.62MB 1.7s
=> => sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 188B / 188B 1.9s
=> => sha256:197843862cd5ca7e4c4ed2e392193bfc887c974c76ec8062a5aa817cb865fe49 6.88kB / 6.88kB 2.1s
=> => sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 126.88MB / 1.09GB 27.5s
=> => extracting sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 0.6s
=> => sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 63.72kB / 63.72kB 9.0s
[+] Building 29.4s (5/22) docker:default
=> [internal] load metadata for docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04 1.8s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 1.60kB 0.0s
=> [internal] load build context 0.1s
=> => transferring context: 6.13MB 0.0s
=> [builder 1/8] FROM docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 27.6s
=> => resolve docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 0.0s
=> => sha256:28a6f693c19c36c4f911a996b8d7697bb3b423cc20fc455ddcca13373efd45b8 16.30kB / 16.30kB 0.0s
=> => sha256:a3184e4dc6f968da5bba86df3081ff3013f8e3674a9bfce544af8be905d2f17a 2.63kB / 2.63kB 0.0s
=> => sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 39.85MB / 47.88MB 27.6s
=> => sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 743B / 743B 0.0s
=> => sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 29.54MB / 29.54MB 8.5s
=> => sha256:976b13f9ef1ad110649609e8622e8b8010c011ee89afb03c87729873a5658b77 4.62MB / 4.62MB 1.7s
=> => sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 188B / 188B 1.9s
=> => sha256:197843862cd5ca7e4c4ed2e392193bfc887c974c76ec8062a5aa817cb865fe49 6.88kB / 6.88kB 2.1s
=> => sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 126.88MB / 1.09GB 27.6s
=> => extracting sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 0.6s
=> => sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 63.72kB / 63.72kB 9.0s
[+] Building 757.3s (17/22) docker:default => [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 1.90kB 0.0s => [internal] load metadata for docker.io/nvidia/cuda:11.7.1-runtime-ubuntu22.04 1.7s
=> [internal] load metadata for docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04 1.8s => [internal] load .dockerignore 0.0s
=> => transferring context: 1.60kB 0.0s => [internal] load build context 0.1s
=> => transferring context: 6.13MB 0.0s => [builder 1/8] FROM docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 338.4s
=> => resolve docker.io/nvidia/cuda:11.7.1-devel-ubuntu22.04@sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 0.0s => => sha256:28a6f693c19c36c4f911a996b8d7697bb3b423cc20fc455ddcca13373efd45b8 16.30kB / 16.30kB 0.0s
=> => sha256:a3184e4dc6f968da5bba86df3081ff3013f8e3674a9bfce544af8be905d2f17a 2.63kB / 2.63kB 0.0s => => sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 47.88MB / 47.88MB 33.3s
=> => sha256:18aade8cf02eede9d4db5d8a8a73d4505bb2322e91cd54e4c601e5ae100ed691 743B / 743B 0.0s => => sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 29.54MB / 29.54MB 8.5s
=> => sha256:976b13f9ef1ad110649609e8622e8b8010c011ee89afb03c87729873a5658b77 4.62MB / 4.62MB 1.7s => => sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 188B / 188B 1.9s
=> => sha256:197843862cd5ca7e4c4ed2e392193bfc887c974c76ec8062a5aa817cb865fe49 6.88kB / 6.88kB 2.1s => => sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 1.09GB / 1.09GB 202.3s
=> => extracting sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 0.6s => => sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 63.72kB / 63.72kB 9.0s
=> => sha256:125997f820336696a3ac7fcffd8bd1f9b684e41c2a854c840b2fe2d7a51a70c4 1.68kB / 1.68kB 9.2s => => extracting sha256:976b13f9ef1ad110649609e8622e8b8010c011ee89afb03c87729873a5658b77 0.1s
=> => sha256:675adc11913113b8194283b213c5b8a6adf88be66bb71458db659ec794aba143 1.52kB / 1.52kB 9.4s => => sha256:ce04642bc4a108fb00714bccd11e03d0d2cf1c6f0c1f1552a8a36079b5a9a0fa 1.94GB / 1.94GB 323.2s
=> => extracting sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 0.4s => => sha256:ab12bfa13ae3cd46e8b20bc607fb070137b23ca237638f1532758e4eda24b1e4 88.22kB / 88.22kB 34.0s
=> => extracting sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 0.0s => => extracting sha256:197843862cd5ca7e4c4ed2e392193bfc887c974c76ec8062a5aa817cb865fe49 0.0s
=> => extracting sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 8.6s => => extracting sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 0.0s
=> => extracting sha256:125997f820336696a3ac7fcffd8bd1f9b684e41c2a854c840b2fe2d7a51a70c4 0.0s => => extracting sha256:675adc11913113b8194283b213c5b8a6adf88be66bb71458db659ec794aba143 0.0s
=> => extracting sha256:ce04642bc4a108fb00714bccd11e03d0d2cf1c6f0c1f1552a8a36079b5a9a0fa 15.1s => => extracting sha256:ab12bfa13ae3cd46e8b20bc607fb070137b23ca237638f1532758e4eda24b1e4 0.0s
=> [stage-1 1/9] FROM docker.io/nvidia/cuda:11.7.1-runtime-ubuntu22.04@sha256:07804eb7002b8411f3ec1f8b17e707fb6f8fa50572923787c3966a0af1ef4b92 211.0s => => resolve docker.io/nvidia/cuda:11.7.1-runtime-ubuntu22.04@sha256:07804eb7002b8411f3ec1f8b17e707fb6f8fa50572923787c3966a0af1ef4b92 0.0s
=> => sha256:07804eb7002b8411f3ec1f8b17e707fb6f8fa50572923787c3966a0af1ef4b92 743B / 743B 0.0s
=> => sha256:b859685522f72d3e21168c304271823844967bb22e18141d1f0f34694b43aac2 2.21kB / 2.21kB 0.0s
=> => sha256:976b13f9ef1ad110649609e8622e8b8010c011ee89afb03c87729873a5658b77 4.62MB / 4.62MB 1.7s
=> => sha256:b981d3f71344e51bbfc632f776ac37e530436b7fc233c5275601555909474b0e 12.04kB / 12.04kB 0.0s
=> => sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 29.54MB / 29.54MB 8.5s
=> => sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 47.88MB / 47.88MB 33.3s
=> => sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 188B / 188B 1.9s
=> => sha256:197843862cd5ca7e4c4ed2e392193bfc887c974c76ec8062a5aa817cb865fe49 6.88kB / 6.88kB 2.1s
=> => sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 1.09GB / 1.09GB 202.3s
=> => extracting sha256:aece8493d3972efa43bfd4ee3cdba659c0f787f8f59c82fb3e48c87cbb22a12e 746.9s
=> => sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 63.72kB / 63.72kB 9.0s
=> => sha256:125997f820336696a3ac7fcffd8bd1f9b684e41c2a854c840b2fe2d7a51a70c4 1.68kB / 1.68kB 9.2s
=> => sha256:675adc11913113b8194283b213c5b8a6adf88be66bb71458db659ec794aba143 1.52kB / 1.52kB 9.4s
=> => extracting sha256:b63c65d3acaa1b7977b3a20e2479668e65e4fd16d6f119933b550619692b6924 722.2s
=> => extracting sha256:4dda4739d0071d0fbd8b16db376052d74fe243b097f2ee2e8a709f80db9de63c 721.7s
=> => extracting sha256:cf87cabd72e27789a2fe43f3d0a32a42a57d08c07e062c6eaf20431bead810df 553.2s
=> => extracting sha256:7908cc89184bf1738781f8839debb1bf7934aed5b967a439251388d6fc418c5b 0.0s
=> => extracting sha256:675adc11913113b8194283b213c5b8a6adf88be66bb71458db659ec794aba143 0.0s
=> [stage-1 2/9] RUN useradd -m -u 1000 appuser 0.4s
=> [stage-1 3/9] WORKDIR /home/appuser 0.0s
=> [builder 2/8] RUN apt-get update -y && apt-get install -y gcc wget curl git tar bzip2 unzip && rm -rf /var/lib/apt/lists/* 11.3s
=> [builder 3/8] RUN useradd -m -u 1000 appuser 0.2s
=> [builder 4/8] WORKDIR /home/appuser 0.0s
=> [builder 5/8] RUN curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xj bin/micromamba 3.2s
=> [builder 6/8] COPY --chown=appuser:appuser ./environment.yml . 0.1s
=> [builder 7/8] RUN ~/bin/micromamba env create --file environment.yml && ~/bin/micromamba clean -afy --quiet 401.9s
=> [builder 8/8] COPY --chown=appuser:appuser . /home/appuser/DiffDock 0.0s
=> ERROR [stage-1 4/9] COPY --from=builder --chown=appuser:appuser /home/appuser/micromamba /home/appuser/micromamba 0.0s

[stage-1 4/9] COPY --from=builder --chown=appuser:appuser /home/appuser/micromamba /home/appuser/micromamba:


Dockerfile:43

41 |
42 | # Copy the Conda environment and application code from the builder stage
43 | >>> COPY --from=builder --chown=$APPUSER:$APPUSER $HOME/micromamba $HOME/micromamba
44 | COPY --from=builder --chown=$APPUSER:$APPUSER $HOME/bin $HOME/bin
45 | COPY --from=builder --chown=$APPUSER:$APPUSER $HOME/$DIR_NAME $HOME/$DIR_NAME

ERROR: failed to solve: failed to compute cache key: failed to calculate checksum of ref b0ca4b88-1088-435a-bfc5-3220f1caea1d::t4w21q0xi5sny0gu8c05nccnv: "/home/appuser/micromamba": not found

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions