heylf

Hi! I am Florian - Nice to meet you 👋

💻 I’m currently developing scalable workflows and tools to analyze and process spatial omics and single-cell multi-omics data.

spoQC 🖖 : modular framework for multimodal quality control (QC) of imaging-based spatially resolved transcriptomics.
StoatyDive: A tool to evaluate and classify predicted peak profiles to assess the binding specificity of a protein to its targets.
LiMetrack: Lightweight, modular biosample management platform designed to streamline centralized research data handling and sample tracking within biomedical research projects.

nf-core/spatialaxe 🪓 : Nextlfow Xenium data processing pipeline.
Spatial Omics Marker gene detection workflow: Galaxy spatial omics gene pane design workflow.
Galaxy CLIP Explorer 🐛 : A webserver to process, analyse and visualise CLIP-Seq data.
ATAC-Seq workflow: Galaxy ATAC-Seq data processing workflow, together with the Galaxy ATAC-Seq training material ATAC-Seq data analysis.
CUT&RUN workflow: Galaxy CUT&RUN data processing worfklow, together with the Galaxy CUT&RUN training material CUT&RUN data analysis.

nf-core/variantbenchmarking 🏃 : A standardized Nextflow pipeline for benchmarking variant-calling workflows, enabling reproducible and FAIR analysis.
nf-core/scrnaseq: Bioinformatics best-practice analysis pipeline for processing 10x Genomics single-cell RNA-seq data.
SACCELERATOR: A flexible framework for applying spatially aware clustering methods.
nf-core/mcmicro: Nextflow pipeline for processing highly-multiplexed imaging data, as produced by technologies such as Cycif, MIBI, CODEX, SeqIF among others.