FHOOE Hagenberg Bioinformatics/Proteomics Research Group

Bioinformatics/Proteomics Research Group of the FH OOE Hagenberg

README.md

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MSAmanda MSAmanda Public

MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.

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MSAndrea MSAndrea Public

MS Andrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.

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MSAnnika MSAnnika Public

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.

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MSAnnika_Extensions MSAnnika_Extensions Public

List of all available extensions for our cross-linking search engine MS Annika.
MSAnnika_Spectral_Library_exporter MSAnnika_Spectral_Library_exporter Public

Generate a spectral library for Spectronaut from MS Annika results.

Python 1
pyXLMS pyXLMS Public

A python package to process protein cross-linking data.

Python 6 2

Repositories

llm-judge Public

hgb-bin-proteomics/llm-judge's past year of commit activity

Python 0 MIT 0 3 0 Updated Sep 29, 2026
MSAndrea Public
MS Andrea is an open modification search engine that is designed to directly identify peptide modifications on the PSM level.

hgb-bin-proteomics/MSAndrea's past year of commit activity

3 0 0 0 Updated Sep 28, 2026
Internal_Ions_Explorer Public

hgb-bin-proteomics/Internal_Ions_Explorer's past year of commit activity

Python 2 1 13 1 Updated Sep 24, 2026
hgb-bin-proteomics.github.io Public
Bioinformatics/Proteomics Research Group FH OÖ Campus Hagenberg GitHub Webpage.

hgb-bin-proteomics/hgb-bin-proteomics.github.io's past year of commit activity

0 0 0 0 Updated Sep 22, 2026
READ Public
TMTpro-18plex quantification for [single cell] DIA and DDA searches with Chimerys, Spectronaut, and DIA-NN.

hgb-bin-proteomics/READ's past year of commit activity

Python 0 MIT 0 3 0 Updated Sep 21, 2026
TMT_Resolution_GUI Public
Extracts TMT reporter ion intensity, noise, and resolution from the corresponding mass spectra.

hgb-bin-proteomics/TMT_Resolution_GUI's past year of commit activity

0 0 0 0 Updated Sep 21, 2026
READ-GUI Public
Build scripts for the Gooey-based GUI version of READ.

hgb-bin-proteomics/READ-GUI's past year of commit activity

Python 0 MIT 0 0 0 Updated Sep 18, 2026
pyXLMS Public
A python package to process protein cross-linking data.

hgb-bin-proteomics/pyXLMS's past year of commit activity

Python 6 MIT 2 2 0 Updated Sep 15, 2026
pyXLMS-app Public
Link to the web application for pyXLMS.

hgb-bin-proteomics/pyXLMS-app's past year of commit activity

0 MIT 0 0 0 Updated Sep 8, 2026
pyXLMS-template Public template
A template repository for python scripts and projects using pyXLMS.

hgb-bin-proteomics/pyXLMS-template's past year of commit activity

Python 0 MIT 0 0 0 Updated Aug 30, 2026