Hi, I'm Jimmy Lucas

Bioinformatics Engineer focused on reproducible omics workflows, scientific software, and scalable analysis

I work at the intersection of bioinformatics and engineering, building robust workflows for genomics, metagenomics, and microbial research. I enjoy turning complex analysis processes into reproducible, maintainable, and production-ready pipelines.

Main areas of work

• Workflow engineering with Nextflow for reproducible omics pipelines
• Genomics and metagenomics analysis in research and translational settings
• Containerized and HPC-ready bioinformatics pipelines
• Applied machine learning for sequencing workflow optimization and decision support
• Statistical computing, data analysis, and visualization in Python and R

Featured projects

• ESDP — ML framework for predicting optimal polishing rounds in ONT bacterial assemblies
• WGS-Analysis-VariantCalling — Reproducible end-to-end Illumina bacterial WGS workflow
• ONT_BACTERIAL_ANALYSIS — Reproducible end-to-end ONT bacterial genome analysis workflow

GitHub Stats