Pinned Loading

1. AmpliconSuite/AmpliconSuite-pipeline AmpliconSuite/AmpliconSuite-pipeline Public

   A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArchitect, and invokes AmpliconClassifier

   Python 78 31

2. AmpliconSuite/CycleViz AmpliconSuite/CycleViz Public

   Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.

   Python 29 6

3. ReactionDiffusionSimulator ReactionDiffusionSimulator Public

   Simulate and visualize reaction-diffusion models and Turing patterns

   Python 26 3

4. AmpliconSuite/CoRAL AmpliconSuite/CoRAL Public

   Reconstruction of focal amplifications with long reads

   Python 24 8

5. AmpliconSuite/AmpliconClassifier AmpliconSuite/AmpliconClassifier Public

   Classify output of AmpliconArchitect to detect types of focal amplifications present

   Python 21 11

6. AmpliconSuite/AmpliconArchitect AmpliconSuite/AmpliconArchitect Public

   Forked from virajbdeshpande/AmpliconArchitect

   Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.

   Python 10 11