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1. itu-bioinformatics-database-lab/metabolic-network-biomarker-benchmarking itu-bioinformatics-database-lab/metabolic-network-biomarker-benchmarking Public

   A comprehensive benchmarking framework for metabolic network-based biomarker discovery integrating transcriptomics, metabolomics, and genome-scale metabolic models (GEMs). Includes multi-omics inte…

   Jupyter Notebook

2. itu-bioinformatics-database-lab/FluxPRS-HazardAnalysis itu-bioinformatics-database-lab/FluxPRS-HazardAnalysis Public

   A reproducible framework for computing Cox proportional hazard ratios from metabolomics, polygenic risk scores (PRS), and Metabolitics-derived reaction/pathway perturbation scores.

   Jupyter Notebook 1

3. llm-cardiovascular-synthetic-data llm-cardiovascular-synthetic-data Public

   The study asks whether general-purpose large language models (LLMs) can generate useful synthetic clinical cohorts when they are given nothing but the univariate summary of a real dataset.

   Python

4. itu-bioinformatics-database-lab/lymphedema-clinical-ml itu-bioinformatics-database-lab/lymphedema-clinical-ml Public

   ML pipeline & informatics framework to predict breast cancer lymphedema risk. Features ensemble stacking, threshold curves, cross-risk matrices, molecular subtyping, dual-layer feature profiling (S…

   Python