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1. snakemake-illumina-gatkvariant snakemake-illumina-gatkvariant Public

   A Snakemake workflow for variant calling using GATK4 best practices

   Python 6 3

2. snakemake-illumina-fastqc snakemake-illumina-fastqc Public

   A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC

   Python 1 1

3. snakemake-illumina-bcftoolsvariant snakemake-illumina-bcftoolsvariant Public

   Python

4. seekdeep-workflows seekdeep-workflows Public

   This repository contains a suite of bash pipelines designed for the analysis of amplicon sequencing data using SeekDeep

   Shell 1

5. wgs-amplicon-analysis wgs-amplicon-analysis Public

   These R scripts are tailored to process and visualize outputs from various tools like bcftools, SeekDeep, e.t.c, ensuring comprehensive and user-friendly downstream analysis.

   R 1

6. scrna-seq-analysis scrna-seq-analysis Public

   R