A landing page for the BioFAIR Workflow Interoperability Sprint 2026 in Milton Keynes, bringing together contributors from Bioconductor, Galaxy, Nextflow, nf-core, WDL and related workflow communit…

A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

A brief introduction to agentic coding principles and practice

Evaluation for AI outputs against trusted educational rubrics. Measure and improve content quality with research-backed rubrics — ensuring rigor, reliability, and alignment to classroom needs.

A Snakemake workflow for counting single cell RNAseq (scRNA-seq) data with Cell Ranger (Cell Ranger licensing requires a manual download of the software).

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

The Digital Research Competencies (DIRECT) Framework helps classify and describe a wide range of technical and non-technical skills used across different digital research roles. Available at direct…

Toolkit for Single-Cell Velocity

Cookiecutter for snakemake slurm profile

This is the repo that contains code for the hamstring paper

Training materials for mentors and mentees

Training Material for Community Reviewers

Check if a package name is available to use

rOpenSci Packages: Development, Maintenance, and Peer Review

Repo for Community Advisory Board

CodeSandbox example repository you can fork from, to bootstrap your React-Bootstrap projects.

R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown.

List of software packages for multi-omics analysis

single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)

Short lessons from FAS Informatics coffee hour

Analyzing Dependency Heaviness of R Packages

scover

Collaborative cheatsheets for console commands 📚.

Conda recipes for the bioconda channel.

Pretty plotting for SCE objects.