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138 followers · 52 following

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Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

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ksahlin/README.md

I am an associate professor at Stockholm University (the Department of Mathematics) and SciLifeLab Fellow at the National Center for Molecular Biosciences, Science for Life Laboratory. My group develops algorithms and models for analyzing large biological datasets.

Popular repositories Loading

  1. strobealign strobealign Public

    Aligns short reads using dynamic seed size with strobemers

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  2. isONclust isONclust Public

    De novo clustering of long transcript reads into genes

    Python 82 9

  3. strobemers strobemers Public

    A repository for generating strobemers and evalaution

    C++ 79 11

  4. NGSpeciesID NGSpeciesID Public

    Reference-free clustering and consensus forming of long-read amplicon sequencing

    Python 68 16

  5. ultra ultra Public

    Long-read splice alignment with high accuracy

    Python 64 13

  6. BESST BESST Public

    BESST - scaffolder for genomic assemblies

    Python 58 13