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1. BCR-classification-model BCR-classification-model Public

   Explainable machine learning classification for rheumatoid arthritis using B cell receptor sequences

   Jupyter Notebook

2. Database-ICA Database-ICA Public

   MySQL database coursework that queries different databases through REST API and upload results into MySQL server.

   Python

3. HMERF-protein-binder-design HMERF-protein-binder-design Public

   Molecular dynamic simulation of RFdiffusion/ProteinMPNN designed HMERF mutated titin Ig152/Fn3-119 domain protein binder

   Python

4. Raw2AIRR Raw2AIRR Public

   Bioinformatic pipeline used to preprocess adaptive immune receptor repertoire sequencing raw reads into standardised AIRR-format for machine learning analysis

   Python

5. RNAseq-analysis-pipeline RNAseq-analysis-pipeline Public

   RNA seq analysis coursework that analyses the GSE268197 datasets through differential gene expression and functional enrichment analysis

   R