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Fix potential assertion in bntseq fails #120 - #243

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Sometime, both *beg and *end may be larger than far_beg and far_end, and this will cause *end be assigned to far_end (in line 444), and then crash in assert() in line 450.

Sometime, both `*beg` and `*end` may be larger than `far_beg` and `far_end`, and this will cause `*end` be assigned to `far_end` (in line 444), and then crash in `assert()` in line 450.
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Confirmed by #120

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