All pull requests

Pull requests

• build each macOS slice with its own SIMD flags

  #1362·darkavatar23 opened Aug 31, 2026·

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• Add --mod-minimizer: experimental sketch-time mod-minimizer sampling

  #1361·lyfar opened Aug 25, 2026·

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• Fix negative argument to memset

  #1360·guillaume-bugseq opened Aug 5, 2026·

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• Avoid invalid RMQ iterator pointer state

  #1358·stanbot8 opened Aug 3, 2026·

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• SIMDe build fixes

  #1355·blawrence-ont opened Jun 26, 2026Contributor·

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• Fix python segfault when using an invalid Aligner

  #1344·blawrence-ont opened Feb 12, 2026Contributor·

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• paftools sam2paf: Fix edge case for an empty trailing line in sam file

  #1343·cihga39871 opened Feb 9, 2026·

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• typo

  #1329·frederic-mahe opened Oct 26, 2025·

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• Add a usegalaxy.eu badge

  #1326·bgruening opened Oct 14, 2025·

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• add jun_bed and uf parameter in mappy

  #1291·loganylchen opened Apr 1, 2025·

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• Pymake

  #1234·cjw85 opened Aug 14, 2024Contributor·

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  3

• (python) Throw an exception if the index file can't be opened

  #1195·nickzoic opened Apr 19, 2024·

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• Propogate LDFLAGS and other user-supplied options

  #1168·mr-c opened Feb 29, 2024·

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  4

• Fix ar call to support debugging symbols properly

  #1167·mr-c opened Feb 29, 2024·

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• Autodetect aarch64 on POSIX platforms

  #1106·mp15 opened Aug 21, 2023·

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• [TSan] |ktf_worker_t::i| is unsynchronised

  #1056·iiSeymour opened Apr 26, 2023Contributor·

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• Enable compilation on aarch64 Linux

  #924·dslarm opened Jun 7, 2022·

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• Dockerfile for minimal container

  #804·niemasd opened Aug 14, 2021·

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• split-index mapping in separate processes

  #787·mlin opened Jul 21, 2021·

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• Arm actions

  #741·hasindu2008 opened May 11, 2021Contributor·

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• Check freads in index.c and bail if it fails

  #572·mp15 opened Mar 10, 2020·

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