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longyuxi/README.md

Hi there 👋

I'm Jaden, a PhD Candidate in Computational Oncology at Memorial Sloan Kettering Cancer Center (MSKCC).

I build production-grade AI infrastructure to turn messy, unstructured clinical text into queryable, real-world knowledge.

  • I’m currently leading Curate Everything — a data-dictionary-free curation system to structure free-text EHR notes into clinical knowledge graphs for every research question. (Note: Source code is hosted on MSK's institutional GitHub due to PHI/IP constraints).
  • My technical focus is on clinical data extraction and LLM Orchestration.
  • Before my PhD, I studied Math/CS and worked in structural bioinformatics (protein binding affinity prediction).

"Rather than projecting data onto a pre-defined schema, we should organize all information from clinical notes into a knowledge graph."

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  1. PATH-training PATH-training Public

    Predicting Affinity Through Homology (PATH): Interpretable Binding Affinity Prediction with Persistent Homology

    HTML 1

  2. denx20/Hoo-Ray denx20/Hoo-Ray Public

    A Haskell Auto-Parallelizer for Distributed Computing

    Haskell 8

  3. cgl-syntax-highlighter cgl-syntax-highlighter Public

    Syntax highlighting for Clinical Graph Language (.cgl files) - an ad-hoc language for specifying clinical knowledge graphs.

  4. multilingual-chord-chart multilingual-chord-chart Public

    A web app that renders chords aligned with multiple lyric tracks with language toggles, transposition and optional YouTube embed.

    TypeScript