Allow opening Amber NetCDF files

[axsk]

According to https://molstar.org/docs/plugin/file-formats/ .nc or .nctraj are supported as well.

This allows to open them from the context menu.

[a-r-j]

Hi @axsk! Thanks for the PR :)

Have you tried this out? I expect it may require some manipulation of the loading command to dispatch the appropriate command depending on the file type:

VSCoding-Sequence/src/panels/ProteinViewerPanel.ts

Line 190 in ce7a1de

loadCommands.push(

[axsk]

I am not sure how that feature is supposed to work.
I selected files in the VSCode explorer and ran the Lauch Protein Viewer from File(s) command, but only get an error message:

Command 'Lauch Protein Viewer from File(s)' resulted in an error
Cannot read properties of undefined (reading 'map')

2024-09-23 10:43:29.489 [error] TypeError: Cannot read properties of undefined (reading 'map')
    at Function.renderFromFiles ([...]home/.vscode-server/extensions/arianjamasb.protein-viewer-0.1.0/src/panels/ProteinViewerPanel.ts:36:33)
    at [...]home/.vscode-server/extensions/arianjamasb.protein-viewer-0.1.0/src/extension.ts:20:22
    at h ([...]home/.vscode-server/cli/servers/Stable-38c31bc77e0dd6ae88a4e9cc93428cc27a56ba40/server/out/vs/workbench/api/node/extensionHostProcess.js:161:210554)

[axsk]

Oh, maybe I misunderstood. Are you suggesting that we need to translate the file extension to a valid extension type as below?

VSCoding-Sequence/src/panels/ProteinViewerPanel.ts

Lines 186 to 187 in ce7a1de

	if (extension === 'cif' || extension === 'mmCIF' || extension === 'CIF' || extension === 'MMCIF' || extension == '.mCIF' || extension == '.mcif') {
	extension = 'mmcif';

[axsk]

Unfortunately I haven't managed to get the extension dev framework working so I cannot test my suggestions :O