All pull requests

Pull requests

• Release 1.0.1

  #272·by boukn was merged Sep 28, 2026Contributor·

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• Update README

  #268·by etvedte was merged Sep 4, 2026Contributor·

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• Release 1.0

  #266·by boukn was merged Aug 27, 2026Contributor·

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• Make the local SRA read cache relocatable

  #258·by richard-burhans was closed Oct 1, 2026·

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• Update egapx.py for 0.5.2

  #241·by boukn was merged Apr 27, 2026Contributor·

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• Update docker_image.config for 0.5.2

  #240·by boukn was merged Apr 27, 2026Contributor·

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• copy over fix for ext conf problem, and related docs

  #234·by boukn was merged Apr 24, 2026Contributor·

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• Fix for sra.metadata file handling for locally-provided reads

  #232·by etvedte was merged Apr 20, 2026Contributor·

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• Add includeConfig directives to executor config files

  #227·by etvedte was merged Apr 14, 2026Contributor·

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• Update README section titles

  #225·by etvedte was merged Apr 13, 2026Contributor·

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• Release 0.5.1

  #224·by etvedte was merged Apr 13, 2026Contributor·

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• Add annotation-provider option to README

  #192·by etvedte was merged Dec 16, 2025Contributor·

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• Release 0.5.0

  #191·by etvedte was merged Dec 15, 2025Contributor·

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• Updating from NCBI main

  #185·by edwardbirdlab was closed Nov 4, 2025·

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• Release 0.4.1 alpha

  #147·by boukn was merged Jul 15, 2025Contributor·

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• Update README.md

  #139·by etvedte was merged Jun 27, 2025Contributor·

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• Update egapx examples

  #117·by etvedte was merged Jun 5, 2025Contributor·

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• Update README.md

  #116·by etvedte was merged Jun 4, 2025Contributor·

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• Release 0.4.0-alpha

  #115·by boukn was merged Jun 4, 2025Contributor·

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• Update README.md

  #96·by pstrope was merged Apr 2, 2025Contributor·

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• Doc edit toc

  #93·by pstrope was merged Mar 28, 2025Contributor·

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• Release 0.3.2-alpha

  #75·by etvedte was merged Jan 7, 2025Contributor·

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• use "mkdir -p" instead of "mkdir" so the job does not fail if the directory exists (nextflow is running these with "bash -ue")

  #54·by richard-burhans was closed Dec 19, 2024·Draft·

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• Release 0.3.1-alpha

  #53·by victzh was merged Nov 18, 2024·

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• Update README.md

  #48·by etvedte was merged Nov 7, 2024Contributor·

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