All pull requests

Pull requests

• Don't block workflow.onComplete on the MultiQC report

  #4486·robsyme opened Sep 30, 2026Contributor·2 of 4 tasks·

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• switch to nf-core/action for fix_linting and rename it to fix-linting

  #4485·mashehu opened Sep 30, 2026Contributor·

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• Bugfix: import rich.prompt module in singularity container download.

  #4483·MatthiasZepper opened Sep 29, 2026Member·1 task done·

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• Only run subsequent steps if branch-deploy.outputs.continue is true

  #4480·kevinbackhouse opened Sep 24, 2026Contributor·4 tasks·

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• Template: add metro-map workflow diagram feature

  #4478·ewels opened Sep 21, 2026Member·4 of 5 tasks·

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• Preserve hand-written entries when regenerating container configs

  #4476·pinin4fjords opened Sep 21, 2026Member·5 tasks done·

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• Add docs_pages lint test

  #4475·erikrikarddaniel opened Sep 19, 2026Member·4 tasks done·

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• fix: validate manifest.name format when loading pipeline config

  #4470·kokhlo opened Sep 15, 2026·

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• Signal EDAM load failure and widen the extension map

  #4469·TilakSharma07 opened Sep 11, 2026·

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• fix: guard against empty pipeline name in files_exist lint

  #4466·abhi-0203 opened Sep 7, 2026·

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• modules bump-versions: match nf-core container formatting in main.nf

  #4459·asharaali opened Aug 31, 2026·

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• VSCode: add recommended extensions, fix link to admonition styling CSS for markdown previews

  template
  #4455·ewels opened Aug 26, 2026Member·1 of 4 tasks·

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• Add nf-core pipelines containers create-configs

  #4454·ewels opened Aug 25, 2026Member·3 of 4 tasks·

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• Round-trip ci: block in .nf-core.yml

  WIP
  #4453·ewels opened Aug 24, 2026Member·3 of 4 tasks·

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• Point Renovate at the public org preset

  #4451·edmundmiller opened Aug 20, 2026Contributor·

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• Fix/4447 linting supressed

  #4450·JulianFlesch opened Aug 20, 2026Contributor·4 tasks·

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• Remove ext.use_gpu remnants (superseded by task.accelerator)

  #4445·mahesh-panchal opened Aug 17, 2026Member·

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• Add support to Apple container in tools

  #4444·mribeirodantas opened Aug 16, 2026Member·3 of 4 tasks·

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• Fix the always-empty Nextflow version in the CodSpeed workflow

  #4442·FelixKrueger opened Aug 12, 2026·

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• Accept a bare pull_request: in the nf-test workflow trigger

  #4441·FelixKrueger opened Aug 11, 2026·

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• Bump cryptography from 49.0.0 to 50.0.0

  dependenciespython:uv
  #4439·dependabot[bot] opened Aug 5, 2026Bot·

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• Update mcr.microsoft.com/devcontainers/miniconda Docker digest to 26f4e9d

  #4438·renovate[bot] opened Aug 2, 2026Bot·1 task·

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• Update GitHub Actions (major)

  #4437·renovate[bot] opened Aug 1, 2026Bot·1 task·

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• Clear the nf-test PR comment once its failure is fixed

  #4436·FelixKrueger opened Aug 1, 2026·

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• Update pre-commit hooks

  #4435·renovate[bot] opened Aug 1, 2026Bot·1 task·

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