Description of feature
Hey, folks! I'm the author of ViralConsensus, a fast tool for producing a consensus sequence from mapped reads from a viral genome (similar to iVar Consensus):
https://github.com/niemasd/ViralConsensus
It's extremely fast and low-memory (linear with the reference genome length, and constant with the number of reads). It might be a good alternative for consensus sequence reconstruction in the pipeline
Description of feature
Hey, folks! I'm the author of ViralConsensus, a fast tool for producing a consensus sequence from mapped reads from a viral genome (similar to iVar Consensus):
https://github.com/niemasd/ViralConsensus
It's extremely fast and low-memory (linear with the reference genome length, and constant with the number of reads). It might be a good alternative for consensus sequence reconstruction in the pipeline