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1. Microbiome-FMT-Recovery Microbiome-FMT-Recovery Public

   Reproducible computational analysis of gut microbiome dynamics following fecal microbiota transplantation for recurrent C. difficile infection.

   Shell 1

2. Lung-Multiome-Regulatory-Networks Lung-Multiome-Regulatory-Networks Public

   Reproducible single-cell multi-omics analysis of influenza-responsive chromatin, gene expression, and regulatory networks in human alveolar epithelium.

   R 1

3. ELISA-RShiny-Apps ELISA-RShiny-Apps Public

   RShiny apps I created for Kemin to automate ELISA assay planning, data quality assurance, and data analysis.

   R 1

4. DE-and-Pathway-Analysis-HNSCC DE-and-Pathway-Analysis-HNSCC Public

   Given a gene expression dataset (from RNAseq) and a clinical dataset with survival information and tumor status, conduct differential expression analysis and pathway analysis between tumor and tumo…

   R 1

5. Cytokine-Proteomics-for-IPF Cytokine-Proteomics-for-IPF Public

   Olink proteomics to identify differences in the cytokine profiles of patients with idiopathic pulmonary fibrosis, rheumatoid arthritis, and scleroderma

   R 1

6. Python-for-Computational-Biology-and-Bioinformatics-Specialization Python-for-Computational-Biology-and-Bioinformatics-Specialization Public

   DNA replication, motif search, genome sequencing, molecular evolution, and more in Python (UC San Diego Bioinformatics Specialization)

   Python 1