Skip to content

@3dem 3dem

All

    Repositories list

    21 repositories

    • emwrap

      Public
      Python wrappers for CryoEM programs
      Python
      •
      GNU General Public License v3.0
      •0•1•1•3•Updated Oct 1, 2026Oct 1, 2026

    • emhub

      Public
      Web application for monitor EM results
      Python
      •
      GNU General Public License v3.0
      •6•14•8•0•Updated Oct 1, 2026Oct 1, 2026

    • emtools

      Public
      Basic utilities for CryoEM data manipulation
      Python
      •
      GNU General Public License v3.0
      •1•5•1•2•Updated Oct 1, 2026Oct 1, 2026

    • relion

      Public
      Image-processing software for cryo-electron microscopy
      guihpcmolecular-structures
      guihpcmolecular-structurescudaimage-processingnvidiahigh-performance-computinggraphics-programmingctfregularization
      C++
      •
      GNU General Public License v2.0
      •239•558•254•15•Updated Oct 1, 2026Oct 1, 2026

    • relion-documents

      Public
      Documentations for RELION
      TeX
      •
      GNU General Public License v3.0
      •12•15•3•1•Updated Sep 30, 2026Sep 30, 2026

    • emhub-tomo

      Public
      Repo for EMhub-tomo documentation
      Shell
      •0•0•0•0•Updated Sep 24, 2026Sep 24, 2026

    • model-angelo

      Public
      Automatic atomic model building program for cryo-EM maps
      Python
      •
      MIT License
      •28•176•43•2•Updated Jun 15, 2026Jun 15, 2026

    • qscore

      Public
      Q-score in pure Python without requiring Chimera
      Python
      •
      MIT License
      •2•4•0•0•Updated Jun 10, 2026Jun 10, 2026

    • APD

      Public
      Amyloid Packing Difference
      Python
      •
      MIT License
      •4•5•0•0•Updated Apr 8, 2026Apr 8, 2026

    • topaz

      Public
      Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featurin…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •75•8•0•3•Updated Jan 8, 2026Jan 8, 2026

    • relion-blush

      Public
      Blush refinement - For use in RELION-5
      Python
      •
      MIT License
      •5•9•1•0•Updated Dec 15, 2025Dec 15, 2025

    • DynaMight

      Public
      Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
      Python
      •
      Other
      •10•34•11•3•Updated Sep 18, 2025Sep 18, 2025

    • relion-classranker

      Public
      RELION automatic 2D class selection
      Python
      •
      GNU General Public License v3.0
      •4•8•2•0•Updated Sep 16, 2025Sep 16, 2025

    • amyloid_picker

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • em-testdata

      Public
      EM related files (metadata, image, etc) used for running basic tests
      Starlark
      •1•2•0•0•Updated Jun 24, 2024Jun 24, 2024

    • emtable

      Public
      Simple module to deal with EM tabular data (aka metadata)
      Python
      •
      GNU General Public License v3.0
      •2•4•2•0•Updated Jul 25, 2022Jul 25, 2022

    • externprior

      Public
      RELION external reconstruct functionality
      Python
      •
      GNU General Public License v2.0
      •2•12•5•0•Updated Sep 11, 2020Sep 11, 2020

    • emvis

      Public
      Visualization tools for EM data analysis (based on datavis)
      Python
      •
      GNU General Public License v3.0
      •1•4•2•0•Updated Apr 30, 2020Apr 30, 2020

    • datavis

      Public
      Visualization tools for Scientific Data analysis (e.g Images and Tables)
      Python
      •
      GNU General Public License v3.0
      •2•5•1•0•Updated Apr 30, 2020Apr 30, 2020

    • emcore

      Public
      Basic image processing library for Electron Microscopy
      C++
      •1•8•4•0•Updated Mar 23, 2020Mar 23, 2020

    • emhub-testdata

      Public
      Some testdata for emhub
      1•1•0•0•Updated Feb 22, 2020Feb 22, 2020
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.