NygenAnalytics repositories

6 repositories

scarf
Public
Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop to atlas scale, with r…
single-cell object-storage single-cell-omics
single-cell object-storage single-cell-omics scrna-seq-analysis single-cell-multiomics scalable-computing provenance-tracking
Python
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BSD 3-Clause "New" or "Revised" License
•18•126•0•3•Updated Oct 1, 2026Oct 1, 2026
.github
Public
Public info on Nygen's Github account
0•0•0•0•Updated Sep 21, 2026Sep 21, 2026
CyteOnto
Public
Automated semantic comparison of cell type annotations
Python
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MIT License
•2•6•2•16•Updated Aug 21, 2026Aug 21, 2026
CyteTypeR
Public
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
rna-seq transcriptomics single-cell
rna-seq transcriptomics single-cell marker-genes seurat disease-prediction celltype-annotation llm celltype-identification agentic-ai
R
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Other
•2•40•3•1•Updated Aug 11, 2026Aug 11, 2026
CyteType
Public
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
rna-seq transcriptomics single-cell
rna-seq transcriptomics single-cell marker-genes disease-prediction scanpy anndata celltype-annotation llm celltype-identification
Python
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Other
•15•138•4•1•Updated Aug 11, 2026Aug 11, 2026
CyteType_manuscript
Public
Scripts and notebooks for the CyteType manuscript
Jupyter Notebook
•0•1•0•0•Updated Nov 24, 2025Nov 24, 2025

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