Skip to content
View rob-p's full-sized avatar
🎯
Focusing
🎯
Focusing

Block or report rob-p

Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
rob-p/README.md

Hi 👋 — I'm Rob

I lead the COMBINE-lab at the University of Maryland, where I am an associate professor of Computer Science and a member of UMIACS and the Center for Bioinformatics and Computational Biology. We (the COMBINE-lab) work mostly on algorithms and data structures for efficient processing, indexing, querying, and inference in high-throughput sequencing data.

Some Info

⚡ Fun fact: Our lab writes most of our tools in Rust (and think it is a strong contender to replace / augment C++ in compute-intensive bioinformatics applications)!

👯 I’m looking to collaborate on interesting projects related to processing, indexing, querying, and inference in high-throughput sequencing data (after all, it's what we do!).

Popular repositories Loading

  1. FQFeeder FQFeeder Public

    Self-contained, multi-threaded fasta/q parser

    C++ 48 9

  2. mcflow mcflow Public

    An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.

    C++ 25 8

  3. BooM BooM Public

    A hash map using the BooPHF perfect hash function

    C++ 13 2

  4. carlworld-beamer-slide-theme carlworld-beamer-slide-theme Public

    Carl Compliant Beamer slide theme

    10 6

  5. cpp11fun cpp11fun Public

    A small set of examples demonstrating features of C++11

    C++ 8

  6. ScalaIntro ScalaIntro Public

    A small set of Scala examples & links for a brief Scala introduction given at UMD

    3