Commits

History for

Commits on Aug 30, 2026

New option `-F, --format` to extend the consequence annotation.
pd3
committed
905ea78

Commits on Aug 21, 2026

Fix man page typo, correct is --trim-unseen-allele, not --trim-unseen-alleles (resolves #2586)
pd3
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608fc0c
New option `--allow` to selectively relax validation checks
pd3
committed
6eaa935

Commits on Jul 9, 2026

Release 1.24
daviesrob
committed
fb9f0f7

Commits on Jun 16, 2026

Update man page
pd3
committed
c574934

Commits on Apr 7, 2026

Fix erroneous INFO/END recalculation; New --no-realign option
pd3
committed
d937577

Commits on Mar 30, 2026

Add new `-m exact` merging mode. Resolves #2498
pd3
committed
9be8367

Commits on Mar 18, 2026

Merge version number bump and NEWS file from master
daviesrob
committed
ac0825e
Release 1.23.1
daviesrob
committed
ff1604d

Commits on Mar 4, 2026

minor: Update man page
pd3
committed
94bc110

Commits on Dec 16, 2025

Release 1.23
daviesrob
committed
56e72e4

Commits on Oct 9, 2025

Emphasize there is a difference when annotating from VCF/BCF vs tab-delimited annotation file (#2454)
pd3
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c5a978f

Commits on Jul 21, 2025

Make `-d, --max-depth 0` set the depth to unlimited
pd3
committed
57bb27b

Commits on Jun 22, 2025

Add smpl_count/scount functions, similar to other per-sample functions
pd3
committed
e412f74

Commits on Jun 20, 2025

Allow non-existent chromosomes in fasta file when --force is used (such as chrMT). Update documentation
pd3
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2563cad

Commits on Jun 15, 2025

Make gtcheck understand gVCF blocks
pd3
committed
9d3a0ce

Commits on May 30, 2025

Add options `--samples-list` and `--samples-file`
pd3
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5cff2de
Release 1.22
daviesrob
committed
0949c4d

Commits on May 20, 2025

Add the option `-v, --verbosity INT` to all bcftools commands and plugins
pd3
committed
056ae51

Commits on Apr 30, 2025

New option to remove or annotate clusters of sites within a window
pd3
committed
1719c60

Commits on Mar 20, 2025

Merge branch 'develop' of github.com:samtools/bcftools into develop
pd3
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487cecf
Rename AFS to VRFS, variant read frequency score
pd3
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f9649a6

Commits on Mar 19, 2025

Change in the `--unify-chr-names` option
pd3
committed
2d84e07

Commits on Mar 18, 2025

Add experimental support for alternative genetic code tables
pd3
committed
ccffa42

Commits on Mar 5, 2025

updatedoc

lindenb
authored and
pd3
committed
c55ec7b

Commits on Feb 27, 2025

Add filtering/annotation support for Fishers exact test
pd3
committed
49c5e6a

Commits on Jan 29, 2025

Make the regex negation work correctly with missing values
pd3
committed
827b2cd
Escape (C), it was not meant to be a copyright character!
pd3
committed
d61bb5b

Commits on Jan 2, 2025

Make it possible to refer to the ID column from the FORMAT expression
pd3
committed
707336b

Commits on Dec 28, 2024

Update bcftools/roh and roh-viz documentation
pd3
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e2815b4

Commits on Dec 16, 2024

Update documentation,
pd3
committed
00dc466

Commits on Dec 3, 2024

Minor documentation fix, see #164
pd3
committed
3351124

Commits on Dec 2, 2024

Rename noise-profile plugin
pd3
committed
25aff97

Commits on Oct 22, 2024

Update documentation
pd3
committed
4735097

Commits on Oct 10, 2024

Stop referring to `-d none` by the documentation
pd3
committed
e60c622