samuelbharti

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Samuel Bharti samuelbharti

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Computational biologist building open-source tools for genomics, multi-omics, and scientific discovery.

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samuelbharti/README.md

I work on cancer genomics and build whatever the science needs: apps, pipelines, agents, sometimes a faster R.

Now

Doctoral Researcher in Bioinformatics @ UAB, working on NF1 and associated cancers.
Previously:
- Software Engineering Intern, Shiny team @ Posit (Summer 2026)
- Human Genetics (gRED) intern @ Genentech (Summer 2025)
Publications in computational biology and genomics (ORCID).

Shiny Bioinformatics Showcase: a gallery of 10 apps and 5 packages I built, live on Posit Connect Cloud. Source GitHub

Learn more in my talk here: genomes-prompts-shiny

Projects, apps, packages, and teaching: samuelbharti.com/work

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biobouncer biobouncer Public

Best way to validate gene symbols, ontology terms, variant formats, and other biological database IDs in apps and pipelines

Python 4
biocohort biocohort Public

Keeps the subjects, samples, and analysis outputs of a genomics (or any omics) study in one validated R object.

R 3
bioclients bioclients Public

Look up genes, variants and proteins from R. One consistent way to call gnomAD, ClinVar, UniProt, Ensembl and other biological databases, instead of writing a client for each one.

R 2
RShiny_template RShiny_template Public template

An R Shiny App template.

R 4
posit-dev/shinyreact posit-dev/shinyreact Public

Shiny UI infrastructure for React-based component rendering

TypeScript 20 3
ropensci/rentrez ropensci/rentrez Public

talk with NCBI entrez using R

R 221 41