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1. Deep-learning-virtual-fluorescent-labeling-of-vascular-structures Deep-learning-virtual-fluorescent-labeling-of-vascular-structures Public

   This repository contains the code associated with our robust, deep learning approach for accurately identifying and labeling vascular structures within fibrin scaffolds. These advancements will ena…

   Python

2. Detecting-White-Beads Detecting-White-Beads Public

   Detecting white (in-focus) beads for active microrheology stiffness measurements within 3D scaffolds. This model saved our lab time and effort by automating the process of selecting beads in focus.

   Python

3. Fiber-Tension-Microscopy Fiber-Tension-Microscopy Public

   Measure per-fiber mechanical tension in 3D ECMs from confocal line scans using Fiber Tension Microscopy (FTM).

   MATLAB 2 1

4. Label-free-prediction-of-fluorescently-labeled-fibrin-networks Label-free-prediction-of-fluorescently-labeled-fibrin-networks Public

   Forked from AndresFGuerrero/Label-free-prediction-of-fluorescently-labeled-fibrin-networks

   A deep learning framework to predict fluorescently labeled fibrin fibers. The model leverages a fully convolutional image-to-image mapping trained on stacks of reflection microscopy acquired at thr…

   Python

5. CAPSTONE-PROJECT--Lung-Tumor-Segmentation CAPSTONE-PROJECT--Lung-Tumor-Segmentation Public

   Minimal, end-to-end pipeline for lung tumor semantic segmentation using a U-Net–style encoder–decoder.

   Jupyter Notebook

6. Label-free-prediction-of-Cell-Painting-from-brightfield-images Label-free-prediction-of-Cell-Painting-from-brightfield-images Public

   Forked from crosszamirski/Label-free-prediction-of-Cell-Painting-from-brightfield-images

   Label Free Prediction of Cell Painting from Brightfield Images

   Python