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shadowbatcode/README.md

Hi there, I'm Wu 👋

Research-oriented builder at the intersection of Bioinformatics · Machine Learning · Practical AI Systems

🎓 Background in Electronic Information Engineering

I focus on turning research ideas into executable systems, especially in:

protein & peptide modeling · biological interaction prediction · graph learning · reproducible ML workflows · cross-domain engineering systems


🧠 About Me

I work on problems that require both theoretical understanding and practical implementation.

My interests sit at the intersection of:

  • 🧬 Biology × Artificial Intelligence
  • 📊 Structured Data × Representation Learning
  • 🧪 Research Ideas × Engineering Execution
  • 🔬 Scientific Modeling × Reproducible Workflows
  • ⚙️ Electronics × Intelligent Systems

I enjoy breaking down complex problems and turning abstract ideas into systems that actually run.


🚀 Current Focus

🧬 Bioinformatics & AI for Science

  • Protein / peptide property prediction
  • Protein–protein interaction (PPI) prediction
  • Cold-start biological relation inference
  • Multimodal biological data fusion
  • Knowledge-guided learning
  • Graph representation learning
  • Equivariant & diffusion-style modeling

🤖 Machine Learning Engineering

  • PyTorch-based training pipelines
  • Experiment design & ablation studies
  • Data preprocessing workflows
  • Structured logging & result analysis
  • Reproducible research pipelines

📊 Data Science & Analysis

  • Structured data processing (Pandas)
  • Statistical reasoning & interpretation
  • Scientific visualization
  • Geographic / panel / DID-style modeling

⚙️ Engineering Background

🧩 Electronic Information Engineering

  • Circuit simulation: Multisim · Proteus
  • PCB design: Altium Designer
  • Embedded systems: Arduino · 8051 · STM32F
  • FPGA / industrial tools: Quartus · GX Develop

📐 Mathematical Modeling & Optimization

  • Integer / Nonlinear Programming
  • Constraint optimization
  • Global optimization algorithms
  • Real-world applied optimization

🎮 Interactive Development

  • Game development with Unity · Godot

🛠️ Technical Stack

Languages Python · C · MATLAB · SQL · Markdown

AI / Data PyTorch · PyTorch Lightning · Pandas · NumPy · Scikit-learn

Engineering Multisim · Proteus · Altium Designer · Quartus

Tools VS Code · PyCharm · AutoDL · Git · Jupyter


🔧 Currently Building

  • Knowledge-guided multimodal frameworks for cold-start PPI prediction
  • Research workflows for scientific modeling
  • Practical automation tools with Python
  • Systems connecting biological data · modeling · interpretability

🧩 How I Work

  • Prefer clear frameworks over vague ideas
  • Focus on usefulness, structure, and execution
  • Turn messy problems into organized systems
  • Value depth over surface-level knowledge
  • Optimize workflows after understanding the full system
  • Move smoothly between research thinking ↔ engineering implementation

📌 Philosophy

Build useful things. Understand first principles. Prefer substance over appearance. Iterate continuously.


🤝 Contact

Open to collaboration, research discussion, and interesting technical projects.

Pinned Loading

  1. MultiScaleToxic MultiScaleToxic Public

    Dual-scale peptide property prediction with atom/residue encoders and cross-attention fusion.

    Jupyter Notebook 1

  2. YarlungZangbo-DID-Enterprise-Registration YarlungZangbo-DID-Enterprise-Registration Public

    DID and event-study analysis of Yarlung Zangbo hydropower effects on Tibetan firm registration.

    Python

  3. TL-CladOpt TL-CladOpt Public

    MATLAB transfer-learning framework for laser cladding parameter optimization and process modeling.

    MATLAB

  4. Enzoria Enzoria Public

    Three-modal enzyme function classification using sequence, structure, and text representations.

    Python

  5. Residential-Elevator-Pricing-Optimization Residential-Elevator-Pricing-Optimization Public

    Mathematical-modeling solution for residential elevator pricing, cost allocation, and optimization analysis.

    Python

  6. VisionCart-Perception-Suite VisionCart-Perception-Suite Public

    Vision robot perception suite for color-maze mapping, ROI voting, and OpenMV/OpenART route classification.

    Python