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1. vanheeringen-lab/seq2science vanheeringen-lab/seq2science Public

   Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

   Python 169 28

2. vanheeringen-lab/genomepy vanheeringen-lab/genomepy Public

   genes and genomes at your fingertips

   Python 410 41

3. vanheeringen-lab/gimmemotifs vanheeringen-lab/gimmemotifs Public

   Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

   Python 129 35

4. vanheeringen-lab/ANANSE vanheeringen-lab/ANANSE Public

   Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

   Python 96 16

5. vanheeringen-lab/anansnake vanheeringen-lab/anansnake Public

   Automate long-running ANANSE analyses with snakemake

   Python 2 1

6. TSA TSA Public

   Time-series alignment for bulk RNA-seq

   Jupyter Notebook