⚡ Super fast clustering for high-dimensional vectors on CPUs (x86, ARM) and GPUs — for Python and C++. Faster clustering of vector embeddings than FAISS

A comprehensive cancer DNA/RNA analysis and reporting pipeline

unofficial bitwarden cli

Personal Cancer Genome Reporter (PCGR)

[Nature] Training patient-specific 2D/3D registration models in 5 minutes

🌿🫐 bramble: project spliced genomic alignments into transcriptomic space

Static SCIP code-intelligence indexer for R packages (tree-sitter, optional R runtime for deeper symbol resolution)

Multi-target protein binder design for specificity and cross-reactivity.

Spatial Transcriptomics As Rasterized Tensors (STARIT)

🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.

Cross-Attention Mechanism for Modeling the Interaction of HLA Class II Molecules with Peptides.

Local-first search across your workspace, built for humans and AI agents.

Annotation-independent molecular-evidence archives for single-cell RNA-seq

OmegAMP: A diffusion-based deep learning framework for targeted, controllable de novo design of antimicrobial peptides (AMPs) with high wet-lab success rates.

SpaceNet is an open-source Python package for the spatial analysis of spatially embedded networks.

Inference at the speed of light.

Modular cross-runtime WebGPU library for shaders, 3D scenes, GPU tensors, neural networks, and math viz

Tissue- and diagnosis-specific gene signatures for labeling cell types in single-cell RNA-seq data

A vector index built on TurboQuant, written in Rust with Python bindings

A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Fast, parallel 2D Delaunay triangulation using exact integer predicates

Ultra-fast and customizable Python charts

An extremely fast R package manager, written in Rust. The R equivalent of uv for Python.

RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome

Bento, the office suite that fits in a file

Kourami: Graph-guided assembly for HLA alleles

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data