SlicerMorph Tutorials These tutorials show how to use SlicerMorph (and other relevant Slicer) modules in digital morphology and morphometrics related tasks. Tutorial descriptions Data Import/Export, Downsampling, Transformations Getting Data: Shows how to use the Slicer's Sample Data and SlicerMorph's ImportFromURL modules to download and access sample data to be used in tutorials ImageStacks: Tutorial on how to import non-DICOM imagestacks easily into Slicer. SkyscanReconImport: How to import output from Bruker/Skyscan MicroCT GEVolImport: A utility module import 3D volumes from GE/Phoenix scanners with PCR/VOL combination DICOM CropVolume Volumes Models Transforms FastModelAlign: How to scale & rigidly align 3D models using point clouds registration Visualization Volume Rendering Lights Animator: How to create keyframe-based animations of microCT scans HiResScreenCapture: How to generate highDPI still images Colorize Volume: Markups Related Markups-I: Introduction markup types, UI, settings: Markups-II: Resampling Semi-landmarks on curves Markups-III: Landmark Template Creations MarkupEditor: How to subset/edit dense landmark sets Segmentations Related Overview of Segmentation modules and related data types Creating custom color tables with terminologies Segmentation tutorial Editing 3D Models via Surface Toolbox and Dynamic Modeler Creating Solid Models from Segmentations Geometric Morphometrics Related Grid-based Semi-Landmarking: Creating a template of Pseudo-landmarks via PseudoLMGenerator: MergeMarkups: Merging fix and semiLMs or separate curve semiLMs for analysis ALPACA: Automated Landmarking through Point cloud Alignment and Correspondence Analysis MALPACA: Multi-template ALPACA and Kmeans based template selection: GPA-I: Basics of GPA: Setting the analysis, exploring the morphospace GPA-II: 3D interactive visualization of morphospace and exporting animations GPA-III: Exporting data/results for R GPA-IV: Visualizing PCA results as heatmaps DeCaL Automated semi and fixed landmarking tutorial DeCA-I: Dense Surface Correspondence Analysis DeCA-II: Symmetry Analysis Photogrammetry User Guide for the Photogrammetry Extension Photogrammetry module video tutorial Others What is a microCT: A short review of what microCT imaging is, and how it compares to medical CT and some additional details SlicerMorph preferences: Explains what customizations can be done to Slicer as well as how to set download directory Discourse thread on how to reorient and resample in Slicer Discourse thread on rendering multi-channel (RGB) microscopy datasets in Slicer How to use sequences module to store rendering and orientation states to come back Dr. Jaimi Gray's Quick Guide for various 3D Slicer modules. Icons are clickable and will take you to her YT videos: Deep-Learning based segmentation models MEMOS: A pre-trained segmentation model for E15 fetal mouse scans MonaiLabel: a server-client system that facilitates segmentation by using AI MonaiLabel: How to train new AI based segmentation models from scratch