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1. tree-annotation tree-annotation Public

   R scripts to annotate protein phylogenetic trees with data, annotate species trees with protein phyletic patterns and plot

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2. repr-genome-download repr-genome-download Public

   Utility scripts to download all complete, latest, and representative RefSeq genomes with one representative per taxonomic rank of interest according to NCBI Taxonomy database.

   Python 1

3. pegp pegp Public

   PEGP (protein evolutionary genomics pipeline). A software tool for protein homology search, phylogenetic tree construction with annotations (taxonomy, domain architecture, genome context), and reco…

   Python