Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.

Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.

ChIP-seq peak-calling, QC and differential analysis pipeline.